Type: Package
Package: metid
Title: Metabolite identification based on MS1 and MS2 spectra
Version: 1.3.1
Date: 2025-08-14
Authors@R: c(
    person(given = "Xiaotao",
           family = "Shen",
           role = c("aut", "cre"),
           email = "shenxt1990@outlook.com",
           comment = c(ORCID = "0000-0002-9608-9964")),
        person(given = "Si",
           family = "Wu",
           role = c("ctb")),
           person(given = "Hanyah",
           family = "Zackriah",
           role = c("ctb")),
           person(given = "Liang",
           family = "Liang",
           role = c("ctb")),
           person(given = "Songjie",
           family = "Chen",
           role = c("ctb"))
           )
Description: Metabolite identification using MS1 and MS2 databases. 
             metid is an R package that combines information from all major 
             databases for comprehensive and streamlined compound annotation. 
             metid is a flexible, simple and powerful tool that can be 
             installed on all platforms, 
             allowing the compound annotation process to be fully automatic 
             and reproducible.
License: GPL-2 | file LICENSE
URL: https://github.com/tidymass/metid
BugReports: https://github.com/tidymass/metid/issues
Depends: 
    R (>= 4.1)
Imports:
    BiocParallel,
    crayon,
    dplyr,
    future,
    furrr,
    tidyr,
    ggplot2,
    pbapply,
    grDevices,
    utils,
    stats,
    readr,
    stringr,
    tibble,
    magrittr,
    masstools,
    purrr,
    plyr,
    MSnbase,
    cli,
    rstudioapi,
    rlang,
    massdataset,
    ggraph,
    igraph,
    tidygraph,
    methods,
    progress
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle,
    RUnit,
    plotly,
    readxl,
    ProtGenerics,
    ComplexUpset,
    testthat (>= 3.0.0)
VignetteBuilder: 
    knitr
biocViews: Metabolomics, MassSpectrometry
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Remotes: 
    gitlab::tidymass/masstools,
    gitlab::tidymass/massdataset
Config/testthat/edition: 3
