Singal Flow Analysis
0.1
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sfa
Singal Flow Analysis
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Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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P
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R
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S
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T
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U
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V
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W
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Z
A
A (sfa.base.Data attribute)
(sfa.Data attribute)
add_algorithm() (sfa.manager.JobManager method)
add_column_labels() (sfa.plot.tableaxis.TableAxis method)
add_data() (sfa.manager.JobManager method)
add_row_labels() (sfa.plot.tableaxis.TableAxis method)
Algorithm (class in sfa)
(class in sfa.base)
AlgorithmSet (class in sfa)
(class in sfa.containers)
alpha (sfa.algorithms.np.NetworkPropagationParameterSet attribute)
analyze_perturb() (in module sfa.analysis.perturb)
apply_inputs() (sfa.algorithms.np.NetworkPropagation method)
apply_perturbations() (sfa.algorithms.np.NetworkPropagation method)
apply_weight_norm (sfa.algorithms.np.NetworkPropagationParameterSet attribute)
arrange_si() (in module sfa.control.influence)
axes (sfa.plot.base.BaseGridPlot attribute)
B
b (sfa.algorithms.np.NetworkPropagation attribute)
BaseGridPlot (class in sfa.plot.base)
BaseRandomBatchSimulator (class in sfa.analysis.random.base)
BaseRandomSimulator (class in sfa.analysis.random.base)
BaseTable (class in sfa.plot.base)
BatchResultTable (class in sfa.plot.table_batch)
BorisovData (class in sfa.data.borisov_2009)
C
calc_accuracy() (in module sfa)
(in module sfa.stats)
ChoData (class in sfa.data.cho_2016)
colorbar (sfa.plot.heatmap.Heatmap attribute)
(sfa.plot.table_hierarchical_clustering.HierarchicalClusteringTable attribute)
colorbar_fontsize (sfa.plot.table_hierarchical_clustering.HierarchicalClusteringTable attribute)
colorbar_tick_fontsize (sfa.plot.heatmap.Heatmap attribute)
colors (sfa.plot.base.BaseGridPlot attribute)
column_tick_fontsize (sfa.plot.base.BaseGridPlot attribute)
(sfa.plot.heatmap.Heatmap attribute)
compute() (sfa.Algorithm method)
(sfa.algorithms.np.NetworkPropagation method)
(sfa.base.Algorithm method)
compute_batch() (sfa.Algorithm method)
(sfa.algorithms.np.NetworkPropagation method)
(sfa.base.Algorithm method)
compute_graphics() (in module sfa.vis)
(in module sfa.vis.utils)
compute_influence() (in module sfa.control.influence)
ConditionTable (class in sfa.plot.table_condition)
ConditionTableAxis (class in sfa.plot.tableaxis)
copy() (sfa.Algorithm method)
(sfa.base.Algorithm method)
create_algorithm() (in module sfa.algorithms.sp)
create_data() (in module sfa.data.borisov_2009)
(in module sfa.data.cho_2016)
(in module sfa.data.flobak_2015)
(in module sfa.data.fumia_2013)
(in module sfa.data.korkut_2015a)
(in module sfa.data.molinelli_2013)
(in module sfa.data.nelander_2008)
(in module sfa.data.pezze_2012)
(in module sfa.data.schliemann_2011)
(in module sfa.data.steinway_2015)
(in module sfa.data.turei_2016)
(in module sfa.data.zanudo_2015a)
(in module sfa.data.zanudo_2017)
create_from_sif() (in module sfa)
(in module sfa.fileio)
create_test_data() (in module sfa.data.borisov_2009)
D
Data (class in sfa)
(class in sfa.base)
data (sfa.Algorithm attribute)
(sfa.base.Algorithm attribute)
DataSet (class in sfa)
(class in sfa.containers)
df_conds (sfa.base.Data attribute)
(sfa.Data attribute)
df_exp (sfa.base.Data attribute)
(sfa.Data attribute)
df_ptb (sfa.base.Data attribute)
(sfa.Data attribute)
df_sim (sfa.base.Result attribute)
(sfa.Result attribute)
dg (sfa.base.Data attribute)
(sfa.Data attribute)
E
exsol_forbidden (sfa.algorithms.np.NetworkPropagationParameterSet attribute)
F
fig (sfa.plot.base.BaseGridPlot attribute)
FlobakData (class in sfa.data.flobak_2015)
fontsize (sfa.plot.tableaxis.TableAxis attribute)
FrozenClass (class in sfa)
(class in sfa.utils)
FumiaData (class in sfa.data.fumia_2013)
G
get_akey() (in module sfa)
(in module sfa.utils)
get_avalue() (in module sfa)
(in module sfa.utils)
gridspec (sfa.plot.base.BaseGridPlot attribute)
H
has_link_perturb (sfa.base.Data attribute)
(sfa.Data attribute)
Heatmap (class in sfa.plot.heatmap)
HierarchicalClusteringTable (class in sfa.plot.table_hierarchical_clustering)
I
i2n (sfa.base.Data attribute)
(sfa.Data attribute)
iadj_to_idf (sfa.base.Data attribute)
(sfa.Data attribute)
initialize() (sfa.Algorithm method)
(sfa.Data method)
(sfa.algorithms.np.NetworkPropagationParameterSet method)
(sfa.algorithms.sp.SignalPropagationParameterSet method)
(sfa.base.Algorithm method)
(sfa.base.Data method)
initialize_basal_activity() (sfa.Algorithm method)
(sfa.algorithms.np.NetworkPropagation method)
(sfa.base.Algorithm method)
initialize_network() (sfa.Algorithm method)
(sfa.algorithms.np.NetworkPropagation method)
(sfa.base.Algorithm method)
inputs (sfa.base.Data attribute)
(sfa.Data attribute)
J
JobManager (class in sfa.manager)
K
KorkutData (class in sfa.data.korkut_2015a)
L
lim_iter (sfa.algorithms.np.NetworkPropagationParameterSet attribute)
linewidth (sfa.plot.heatmap.Heatmap attribute)
(sfa.plot.tableaxis.TableAxis attribute)
M
max_spl() (in module sfa)
(in module sfa.topology)
MolinelliData (class in sfa.data.molinelli_2013)
N
n2i (sfa.base.Data attribute)
(sfa.Data attribute)
names_ptb (sfa.base.Data attribute)
(sfa.Data attribute)
NelenderData (class in sfa.data.nelander_2008)
NetworkPropagation (class in sfa.algorithms.np)
NetworkPropagationParameterSet (class in sfa.algorithms.np)
no_inputs (sfa.algorithms.np.NetworkPropagationParameterSet attribute)
normalize() (in module sfa)
(in module sfa.utils)
P
params (sfa.Algorithm attribute)
(sfa.base.Algorithm attribute)
PezzeData (class in sfa.data.pezze_2012)
prepare_exact_solution() (sfa.algorithms.np.NetworkPropagation method)
(sfa.algorithms.sp.SignalPropagation method)
prepare_iterative_solution() (sfa.algorithms.np.NetworkPropagation method)
(sfa.algorithms.sp.SignalPropagation method)
prioritize() (in module sfa.control.influence)
propagate_exact() (sfa.algorithms.np.NetworkPropagation method)
(sfa.algorithms.sp.SignalPropagation method)
propagate_iterative() (sfa.algorithms.np.NetworkPropagation method)
(sfa.algorithms.sp.SignalPropagation method)
R
rand_flip() (in module sfa)
(in module sfa.utils)
rand_structure() (in module sfa)
(in module sfa.utils)
rand_swap() (in module sfa)
(in module sfa.utils)
rand_weights() (in module sfa)
(in module sfa.utils)
RandomStructureBatchSimulator (class in sfa.analysis.random.structure)
RandomWeightBatchSimulator (class in sfa.analysis.random.weight)
read_inputs() (in module sfa)
(in module sfa.fileio)
read_sif() (in module sfa)
(in module sfa.fileio)
resize_trj() (in module sfa.analysis.perturb)
Result (class in sfa)
(class in sfa.base)
result (sfa.Algorithm attribute)
(sfa.base.Algorithm attribute)
ResultTableAxis (class in sfa.plot.tableaxis)
row_tick_fontsize (sfa.plot.base.BaseGridPlot attribute)
(sfa.plot.heatmap.Heatmap attribute)
S
SchliemannData (class in sfa.data.schliemann_2011)
sfa (module)
sfa.algorithms (module)
sfa.algorithms.np (module)
sfa.algorithms.sp (module)
sfa.analysis (module)
sfa.analysis.perturb (module)
sfa.analysis.random (module)
sfa.analysis.random.base (module)
sfa.analysis.random.structure (module)
sfa.analysis.random.weight (module)
sfa.base (module)
sfa.containers (module)
sfa.control (module)
sfa.control.influence (module)
sfa.data (module)
sfa.data.borisov_2009 (module)
sfa.data.borisov_2009.exp_data (module)
sfa.data.cho_2016 (module)
sfa.data.flobak_2015 (module)
sfa.data.fumia_2013 (module)
sfa.data.korkut_2015a (module)
sfa.data.molinelli_2013 (module)
sfa.data.nelander_2008 (module)
sfa.data.pezze_2012 (module)
sfa.data.pezze_2012.exp_data (module)
sfa.data.schliemann_2011 (module)
sfa.data.schliemann_2011.exp_data (module)
sfa.data.steinway_2015 (module)
sfa.data.turei_2016 (module)
sfa.data.zanudo_2015a (module)
sfa.data.zanudo_2017 (module)
sfa.fileio (module)
sfa.manager (module)
sfa.plot (module)
sfa.plot.base (module)
sfa.plot.heatmap (module)
sfa.plot.si (module)
sfa.plot.table_batch (module)
sfa.plot.table_condition (module)
sfa.plot.table_hierarchical_clustering (module)
sfa.plot.tableaxis (module)
sfa.stats (module)
sfa.topology (module)
sfa.utils (module)
sfa.vis (module)
sfa.vis.utils (module)
SignalPropagation (class in sfa.algorithms.sp)
SignalPropagationParameterSet (class in sfa.algorithms.sp)
simulate_multiple() (sfa.analysis.random.base.BaseRandomBatchSimulator method)
(sfa.analysis.random.base.BaseRandomSimulator method)
simulate_single() (sfa.analysis.random.base.BaseRandomBatchSimulator method)
(sfa.analysis.random.base.BaseRandomSimulator method)
Singleton() (in module sfa)
(in module sfa.utils)
siplot() (in module sfa.plot.si)
splo() (in module sfa)
(in module sfa.topology)
SteinwayData (class in sfa.data.steinway_2015)
T
table_linewidth (sfa.plot.table_hierarchical_clustering.HierarchicalClusteringTable attribute)
TableAxis (class in sfa.plot.tableaxis)
tables (sfa.plot.base.BaseTable attribute)
text_fontsize (sfa.plot.heatmap.Heatmap attribute)
to_networkx_digraph() (in module sfa)
(in module sfa.utils)
TureiData (class in sfa.data.turei_2016)
U
use_rel_change (sfa.algorithms.np.NetworkPropagationParameterSet attribute)
V
vals_ptb (sfa.base.Data attribute)
(sfa.Data attribute)
W
W (sfa.algorithms.np.NetworkPropagation attribute)
Z
ZanudoAData (class in sfa.data.zanudo_2015a)
ZanudoData (class in sfa.data.zanudo_2017)