sfa.data.schliemann_2011 package

Module contents

[Reference] Schliemann, M. et al. Heterogeneity reduces sensitivity of cell death for TNF-Stimuli. BMC Systems Biology 2011, 5:204 http://www.biomedcentral.com/1752-0509/5/204

[Information] - The experimental data was generated using ODE model of Schliemann et al.

(It is hypothesized that the ODE model is quite well constructed enough to be a substitute for real experimental data).

  • The directed network was created by Junsoo Kang (reality312@kaist.ac.kr).

  • The unit of TNF stimulation is nM.

class sfa.data.schliemann_2011.SchliemannData(abbr, data_type, conc_I, fname_conds, fname_exp)[source]

Bases: sfa.base.Data

Attributes
A
abbr

Abbreviation or symbol representing this item.

df_conds
df_exp
df_ptb
dg
has_link_perturb
i2n
iadj_to_idf
inputs
n2i
name

Full name or description of this item.

names_ptb
vals_ptb

Methods

initialize

sfa.data.schliemann_2011.create_data(abbr=None)[source]