Source code for sfa.data.flobak_2015

# -*- coding: utf-8 -*-

"""
[Reference]
Flobak, Å., Baudot, A., Remy, E., Thommesen, L., Thieffry, D., Kuiper, M., & Laegreid, A.
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
PLoS Comput Biol, (2015) 11(8).
"""

import os

import pandas as pd

import sfa
import sfa.base


[docs]def create_data(): return FlobakData()
[docs]class FlobakData(sfa.base.Data): def __init__(self): self._abbr = "flobak_2015" self._name = "Flobak et al. PLoS Comput Biol, (2015) 11(8)" inputs = {} dpath = os.path.dirname(__file__) fpath_network = os.path.join(dpath, 'network.sif') A, n2i, dg = sfa.read_sif(fpath_network, as_nx=True) self._A = A self._n2i = n2i self._i2n = {idx: name for name, idx in n2i.items()} self._dg = dg self._inputs = inputs # The following members are not defined due to the lack of data. self._df_conds = None self._df_exp = None self._df_ptb = None self._has_link_perturb = False self._names_ptb = None self._iadj_to_idf = None
# end of def __init__ # end of def class