# -*- coding: utf-8 -*-
"""
[Reference]
Flobak, Å., Baudot, A., Remy, E., Thommesen, L., Thieffry, D., Kuiper, M., & Laegreid, A.
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
PLoS Comput Biol, (2015) 11(8).
"""
import os
import pandas as pd
import sfa
import sfa.base
[docs]def create_data():
return FlobakData()
[docs]class FlobakData(sfa.base.Data):
def __init__(self):
self._abbr = "flobak_2015"
self._name = "Flobak et al. PLoS Comput Biol, (2015) 11(8)"
inputs = {}
dpath = os.path.dirname(__file__)
fpath_network = os.path.join(dpath, 'network.sif')
A, n2i, dg = sfa.read_sif(fpath_network, as_nx=True)
self._A = A
self._n2i = n2i
self._i2n = {idx: name for name, idx in n2i.items()}
self._dg = dg
self._inputs = inputs
# The following members are not defined due to the lack of data.
self._df_conds = None
self._df_exp = None
self._df_ptb = None
self._has_link_perturb = False
self._names_ptb = None
self._iadj_to_idf = None
# end of def __init__
# end of def class