sfa.data.borisov_2009 package

Module contents

[Reference] Borisov, N. et al. Systems-level interactions between insulin-EGF networks amplify mitogenic signaling. Molecular Systems Biology (2009) 5(1), 256. http://doi.org/10.1038/msb.2009.19

[Information] - The experimental data was generated using ODE model of Borisov et al.

(It is hypothesized that the ODE model is quite well constructed enough to be a substitute for real experimental data).

  • The directed network was created by Daewon Lee (dwl@kaist.ac.kr).

  • The units of EGF and insulin (I) stimulation are nM.

class sfa.data.borisov_2009.BorisovData(abbr, data_type, conc_EGF, conc_I, fname_conds, fname_exp)[source]

Bases: sfa.base.Data

Attributes
A
abbr

Abbreviation or symbol representing this item.

df_conds
df_exp
df_ptb
dg
has_link_perturb
i2n
iadj_to_idf
inputs
n2i
name

Full name or description of this item.

names_ptb
vals_ptb

Methods

initialize

sfa.data.borisov_2009.create_data(abbr=None)[source]
sfa.data.borisov_2009.create_test_data()[source]